Last updated: 2025-01-07
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Knit directory: survival-susie/
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Susie: maxiter = 100 vs. maxiter = 10
BVSNLP: niter = 30
survival.svb: maxiter = 1000 vs. maxiter = 100
susie.rss: maxiter = 100
r2b: niter = 1e6.
time.gtex = readRDS("/project2/mstephens/yunqiyang/surv-susie/sim202406/sim_gtex_default_iter/time_comparison.rds")
time.ukb = readRDS("/project2/mstephens/yunqiyang/surv-susie/sim202406/sim_ukb_niter10/time_comparison.rds")t_mean.gtex <- unlist(lapply(1:length(time.gtex),
function (i) {
res <- subset(time.gtex[[i]],cor_type = "real")
return(mean(res[,5],na.rm = TRUE))
}))
t_mean.ukb <- unlist(lapply(1:length(time.ukb),
function (i) {
res <- subset(time.ukb[[i]],cor_type = "real")
return(mean(res[,5],na.rm = TRUE))
}))res = rbind(t_mean.gtex, t_mean.ukb)
colnames(res) = c("susie", "bvsnlp", "susie.rss", "svb", "r2b")
rownames(res) = c("gtex", "ukb")
res susie bvsnlp susie.rss svb r2b
gtex 331.0061 57.69978 6.448924 138.6065 190.2182
ukb 7275.3637 4498.76360 218.386279 2496.1227 10463.2586
sessionInfo()R version 4.2.0 (2022-04-22)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /software/openblas-0.3.13-el7-x86_64/lib/libopenblas_haswellp-r0.3.13.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=C
[4] LC_COLLATE=C LC_MONETARY=C LC_MESSAGES=C
[7] LC_PAPER=C LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=C LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] workflowr_1.7.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.12 compiler_4.2.0 pillar_1.9.0 bslib_0.3.1
[5] later_1.3.0 git2r_0.30.1 jquerylib_0.1.4 tools_4.2.0
[9] getPass_0.2-2 digest_0.6.29 jsonlite_1.8.0 evaluate_0.15
[13] lifecycle_1.0.4 tibble_3.2.1 pkgconfig_2.0.3 rlang_1.1.3
[17] cli_3.6.2 rstudioapi_0.13 yaml_2.3.5 xfun_0.30
[21] fastmap_1.1.0 httr_1.4.3 stringr_1.5.1 knitr_1.39
[25] fs_1.5.2 vctrs_0.6.5 sass_0.4.1 rprojroot_2.0.3
[29] glue_1.6.2 R6_2.5.1 processx_3.8.0 fansi_1.0.3
[33] rmarkdown_2.14 callr_3.7.3 magrittr_2.0.3 whisker_0.4
[37] ps_1.7.0 promises_1.2.0.1 htmltools_0.5.2 httpuv_1.6.5
[41] utf8_1.2.2 stringi_1.7.6